| Paper Abstract and Keywords |
| Presentation |
2005-01-25 16:20
Design of cellular simulation platform for SBML model
Yow Iwaoka, Yasunori Osana, Tomonori Fukushima, Masato Yoshimi (Keio Univ.), Akira Funahashi, Noriko Hiroi (JST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
| Abstract |
(in Japanese) |
(See Japanese page) |
| (in English) |
Computer simulation in widely used in biochemistry research.
However, simulating large-scale model requires a large computational time.
To reduce it, we have been developing a FPGA-based high-speed simulator, but
previous research mainly forcues on high speed implementation, and standard
model for description has not been prepared.
SBML model, that is a standard modeling language for biochemical networks,
has been popular in many software simulator.
In this reseach report, an environment of FPGA-based simulator which can
use SBML for modeling is implemented and evaluated. |
| Keyword |
(in Japanese) |
(See Japanese page) |
| (in English) |
SBML / FPGA / Biochemical Simulation / / / / / |
| Reference Info. |
IEICE Tech. Rep., vol. 104, no. 591, CPSY2004-74, pp. 63-68, Jan. 2005. |
| Paper # |
CPSY2004-74 |
| Date of Issue |
2005-01-18 (VLD, CPSY) |
| ISSN |
Print edition: ISSN 0913-5685 |
| Download PDF |
|
| Conference Information |
| Committee |
CPSY VLD IPSJ-SLDM |
| Conference Date |
2005-01-25 - 2005-01-26 |
| Place (in Japanese) |
(See Japanese page) |
| Place (in English) |
|
| Topics (in Japanese) |
(See Japanese page) |
| Topics (in English) |
FPGA and its Application, etc |
| Paper Information |
| Registration To |
CPSY |
| Conference Code |
2005-01-CPSY-VLD-IPSJ-SLDM |
| Language |
Japanese |
| Title (in Japanese) |
(See Japanese page) |
| Sub Title (in Japanese) |
(See Japanese page) |
| Title (in English) |
Design of cellular simulation platform for SBML model |
| Sub Title (in English) |
|
| Keyword(1) |
SBML |
| Keyword(2) |
FPGA |
| Keyword(3) |
Biochemical Simulation |
| Keyword(4) |
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| 1st Author's Name |
Yow Iwaoka |
| 1st Author's Affiliation |
Keio University (Keio Univ.) |
| 2nd Author's Name |
Yasunori Osana |
| 2nd Author's Affiliation |
Keio University (Keio Univ.) |
| 3rd Author's Name |
Tomonori Fukushima |
| 3rd Author's Affiliation |
Keio University (Keio Univ.) |
| 4th Author's Name |
Masato Yoshimi |
| 4th Author's Affiliation |
Keio University (Keio Univ.) |
| 5th Author's Name |
Akira Funahashi |
| 5th Author's Affiliation |
Kitano Symbiotic Systems Project, ERATO-SORST, JST (JST) |
| 6th Author's Name |
Noriko Hiroi |
| 6th Author's Affiliation |
Kitano Symbiotic Systems Project, ERATO-SORST, JST (JST) |
| 7th Author's Name |
Yuichiro Shibata |
| 7th Author's Affiliation |
Nagasaki University (Nagasaki Univ.) |
| 8th Author's Name |
Naoki Iwanaga |
| 8th Author's Affiliation |
Nagasaki University (Nagasaki Univ.) |
| 9th Author's Name |
Hiroaki Kitano |
| 9th Author's Affiliation |
Kitano Symbiotic Systems Project, ERATO-SORST, JST (JST) |
| 10th Author's Name |
Hideharu Amano |
| 10th Author's Affiliation |
Keio University (Keio Univ.) |
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| Speaker |
Author-1 |
| Date Time |
2005-01-25 16:20:00 |
| Presentation Time |
30 minutes |
| Registration for |
CPSY |
| Paper # |
VLD2004-108, CPSY2004-74 |
| Volume (vol) |
vol.104 |
| Number (no) |
no.589(VLD), no.591(CPSY) |
| Page |
pp.63-68 |
| #Pages |
6 |
| Date of Issue |
2005-01-18 (VLD, CPSY) |
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