IEICE Technical Committee Submission System
Conference Paper's Information
Online Proceedings
[Sign in]
Tech. Rep. Archives
 Go Top Page Go Previous   [Japanese] / [English] 

Paper Abstract and Keywords
Presentation 2022-11-24 14:15
Fast reconstruction of 3D chromosome structure based on an inverse transform of a recurrence plot
Yoshito Hirata (U. Tsukuba) NLP2022-63
Abstract (in Japanese) (See Japanese page) 
(in English) A recurrence plot was originally proposed as a two-dimensional tool for visualizing a time series (Eckmann et al., EPL 1987; Marwan et al., Phys. Rep., 2007). It is known that one can recover a rough shape of the original time series from a recurrence plot (Hirata et al., Eur. Phys. J. Spec. Top., 2008; Hirata et al., Int. J. Bifurcat. Chaos, 2015; Khor & Small, Chaos, 2016). We use this property to reconstruct 3D chromosome structure from single cell Hi-C data (Hirata et al., Sci. Rep., 2016),
which record which parts of chromosomes are close to which parts (Nagano et al., Nature, 2013; Tan et al., Science, 2018). Furthermore, we improve this recovery process to make it run faster (Hirata et al., Chaos, 2021). The tool of nonlinear time series analysis is opening a door of new biology.
Keyword (in Japanese) (See Japanese page) 
(in English) recurrence plots / inverse transform / single cell Hi-C data / 3D chromosome structure / reconstruction / / /  
Reference Info. IEICE Tech. Rep., vol. 122, no. 280, NLP2022-63, pp. 31-34, Nov. 2022.
Paper # NLP2022-63 
Date of Issue 2022-11-17 (NLP) 
ISSN Online edition: ISSN 2432-6380
Copyright
and
reproduction
All rights are reserved and no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the publisher. Notwithstanding, instructors are permitted to photocopy isolated articles for noncommercial classroom use without fee. (License No.: 10GA0019/12GB0052/13GB0056/17GB0034/18GB0034)
Download PDF NLP2022-63

Conference Information
Committee NLP  
Conference Date 2022-11-24 - 2022-11-25 
Place (in Japanese) (See Japanese page) 
Place (in English)  
Topics (in Japanese) (See Japanese page) 
Topics (in English)  
Paper Information
Registration To NLP 
Conference Code 2022-11-NLP 
Language Japanese 
Title (in Japanese) (See Japanese page) 
Sub Title (in Japanese) (See Japanese page) 
Title (in English) Fast reconstruction of 3D chromosome structure based on an inverse transform of a recurrence plot 
Sub Title (in English)  
Keyword(1) recurrence plots  
Keyword(2) inverse transform  
Keyword(3) single cell Hi-C data  
Keyword(4) 3D chromosome structure  
Keyword(5) reconstruction  
Keyword(6)  
Keyword(7)  
Keyword(8)  
1st Author's Name Yoshito Hirata  
1st Author's Affiliation University of Tsukuba (U. Tsukuba)
2nd Author's Name  
2nd Author's Affiliation ()
3rd Author's Name  
3rd Author's Affiliation ()
4th Author's Name  
4th Author's Affiliation ()
5th Author's Name  
5th Author's Affiliation ()
6th Author's Name  
6th Author's Affiliation ()
7th Author's Name  
7th Author's Affiliation ()
8th Author's Name  
8th Author's Affiliation ()
9th Author's Name  
9th Author's Affiliation ()
10th Author's Name  
10th Author's Affiliation ()
11th Author's Name  
11th Author's Affiliation ()
12th Author's Name  
12th Author's Affiliation ()
13th Author's Name  
13th Author's Affiliation ()
14th Author's Name  
14th Author's Affiliation ()
15th Author's Name  
15th Author's Affiliation ()
16th Author's Name  
16th Author's Affiliation ()
17th Author's Name  
17th Author's Affiliation ()
18th Author's Name  
18th Author's Affiliation ()
19th Author's Name  
19th Author's Affiliation ()
20th Author's Name  
20th Author's Affiliation ()
Speaker Author-1 
Date Time 2022-11-24 14:15:00 
Presentation Time 25 minutes 
Registration for NLP 
Paper # NLP2022-63 
Volume (vol) vol.122 
Number (no) no.280 
Page pp.31-34 
#Pages
Date of Issue 2022-11-17 (NLP) 


[Return to Top Page]

[Return to IEICE Web Page]


The Institute of Electronics, Information and Communication Engineers (IEICE), Japan