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Paper Abstract and Keywords
Presentation 2018-01-19 15:55
Common Sub-Graph Extraction from Idiom Networks of Amino Acid Short Constituent Sequences
Kentaro Maeshiro (Ryukyu Univ), Takeshi Tengan (Meio Univ), Morikazu Nakamura (Ryukyu Univ) MSS2017-73 SS2017-60
Abstract (in Japanese) (See Japanese page) 
(in English) We proposed and developed in our previous works a way to analyze the primal protein structure based on occurrence probability and variances of short constituent sequences of amino acids.
We extend the concept of idioms, a pair of short constituent sequences which appear in near location of sequcence, to idiom networks by connecting series of idioms.
This paper presents a new analysis way for amino acid sequences based on idiom networks.
We formulate a common sub-graph problem for idiom networks and apply existing a maximum clique problem based algorithm.
Computational experiment shows our new method can be applied for practical size of amino acid sequences from the view point of the computational time.
Keyword (in Japanese) (See Japanese page) 
(in English) Bioinformatics / Protein / Amino acid / Graph theory / Common subgraph / / /  
Reference Info. IEICE Tech. Rep., vol. 117, no. 380, MSS2017-73, pp. 149-153, Jan. 2018.
Paper # MSS2017-73 
Date of Issue 2018-01-11 (MSS, SS) 
ISSN Print edition: ISSN 0913-5685    Online edition: ISSN 2432-6380
Copyright
and
reproduction		 All rights are reserved and no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the publisher. Notwithstanding, instructors are permitted to photocopy isolated articles for noncommercial classroom use without fee. (License No.: 10GA0019/12GB0052/13GB0056/17GB0034/18GB0034)
Download PDF MSS2017-73 SS2017-60

Conference Information
Committee SS MSS  
Conference Date 2018-01-18 - 2018-01-19 
Place (in Japanese) (See Japanese page) 
Place (in English)  
Topics (in Japanese) (See Japanese page) 
Topics (in English)  
Paper Information
Registration To MSS 
Conference Code 2018-01-SS-MSS 
Language Japanese 
Title (in Japanese) (See Japanese page) 
Sub Title (in Japanese) (See Japanese page) 
Title (in English) Common Sub-Graph Extraction from Idiom Networks of Amino Acid Short Constituent Sequences 
Sub Title (in English)  
Keyword(1) Bioinformatics  
Keyword(2) Protein  
Keyword(3) Amino acid  
Keyword(4) Graph theory  
Keyword(5) Common subgraph  
Keyword(6)  
Keyword(7)  
Keyword(8)  
1st Author's Name Kentaro Maeshiro  
1st Author's Affiliation Ryukyu University (Ryukyu Univ)
2nd Author's Name Takeshi Tengan  
2nd Author's Affiliation Meio University (Meio Univ)
3rd Author's Name Morikazu Nakamura  
3rd Author's Affiliation Ryukyu University (Ryukyu Univ)
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Speaker Author-1 
Date Time 2018-01-19 15:55:00 
Presentation Time 25 minutes 
Registration for MSS 
Paper # MSS2017-73, SS2017-60 
Volume (vol) vol.117 
Number (no) no.380(MSS), no.381(SS) 
Page pp.149-153 
#Pages 5 
Date of Issue 2018-01-11 (MSS, SS) 

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