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Paper Abstract and Keywords
Presentation 2019-08-02 13:55
A computational method to infer microbial interaction network
Shinji Nakaoka (Hokudai), Suzuki, Takeuchi (Aogaku Univ.) CCS2019-22
Abstract (in Japanese) (See Japanese page) 
(in English) DNA sequence technology is indispensable for identifying a living organism as a set of genes. Metagenomic sequencing simultaneously targets several different microbial species to identify existing microbial species in a given environment. Informatics analysis of metagenomic datasets opens an opportunity to track a disease progression such as inflammatory bowel disease via compositional change of a gut microbial community. Although species composition can be easily identified from metagenomic data via visualization, more elaboration is required to infer associations among microbial species that constitute and maintain a community. In this talk, I would like to introduce research progress on inferring an interaction network in a microbial community from metagenomic datasets.
Keyword (in Japanese) (See Japanese page) 
(in English) microbiota / DNA sequencing / network inference / / / / /  
Reference Info. IEICE Tech. Rep., vol. 119, no. 157, CCS2019-22, pp. 23-25, Aug. 2019.
Paper # CCS2019-22 
Date of Issue 2019-07-25 (CCS) 
ISSN Print edition: ISSN 0913-5685    Online edition: ISSN 2432-6380
Copyright
and
reproduction		 All rights are reserved and no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the publisher. Notwithstanding, instructors are permitted to photocopy isolated articles for noncommercial classroom use without fee. (License No.: 10GA0019/12GB0052/13GB0056/17GB0034/18GB0034)
Download PDF CCS2019-22

Conference Information
Committee CCS IN  
Conference Date 2019-08-01 - 2019-08-02 
Place (in Japanese) (See Japanese page) 
Place (in English) KIKI SHIRETOKO NATURAL RESORT 
Topics (in Japanese) (See Japanese page) 
Topics (in English)  
Paper Information
Registration To CCS 
Conference Code 2019-08-CCS-IN 
Language Japanese 
Title (in Japanese) (See Japanese page) 
Sub Title (in Japanese) (See Japanese page) 
Title (in English) A computational method to infer microbial interaction network 
Sub Title (in English)  
Keyword(1) microbiota  
Keyword(2) DNA sequencing  
Keyword(3) network inference  
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1st Author's Name Shinji Nakaoka  
1st Author's Affiliation Hokkaido University (Hokudai)
2nd Author's Name Suzuki  
2nd Author's Affiliation Aoyamagakuin University (Aogaku Univ.)
3rd Author's Name Takeuchi  
3rd Author's Affiliation Aoyamagakuin University (Aogaku Univ.)
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Speaker Author-1 
Date Time 2019-08-02 13:55:00 
Presentation Time 25 minutes 
Registration for CCS 
Paper # CCS2019-22 
Volume (vol) vol.119 
Number (no) no.157 
Page pp.23-25 
#Pages 3 
Date of Issue 2019-07-25 (CCS) 

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